WDCM and CODATA Joint Workshop

CODATA Task Group on Advancing Informatics for Microbiology

Data management, bioinformatics, information system and networks of microbial resources

Sep.26, 2013
Beijing, China

Hosted By:

Program
Date: September 26th, 2013
Venue:Room 1, Building 8, Friendship Hotel
Co-organizers: Juncai Ma & Hideaki Sugawara

No.

Time

Speakers & Titles

Chaired by Hideaki Sugawara, National Institute of Genetics, Japan

1

9:00-9:25

Dr.Juncai MA, Institute of Microbiology, WFCC-MIRCEN World Data Center for Microorganisms (WDCM),China
Recent activities of WDCM

2

9:25-9:50

Vincent Robert,CBS-KNAW, Fungal Biodiversity Centre, Utrecht, The Netherlands;
The development of the MIRRI ITC infrastructure for microbial resources

3

9:50-10:15

Alexander Vasilenko,IBPM RAS, Pushchino, Russia
Meta-analysis of the possible MIRRI information system characteristics

4

10:20-10:40

Coffee break and photo

Chaired by Juncai Ma

5

10:40-11:05

Vincent Robert,CBS-KNAW, Fungal Biodiversity Centre, Utrecht, The Netherlands;
BioloMICS Software, the ultimate tool for management of culture collections

6

11:05-11:30

Kevin Mccluskey,Fungal Genetics Stock Center, University of Missouri- Kansas City, Missouri, USA
Building a foundation for microbial metagenomics analysis

7

11:30-11:55

Hiroshi Mori,Tokyo Institute of Technology, Yokohama, Japan;
Data integration in the MicrobeDB.jp using Semantic Web technology

8

11:55-12:20

Ipek

9

12:20-14:00

Lunch

Chaired by Kevin Mccluskey

10

14:00-14:25

Supawadee Ingsriswan,Information Systems Laboratory, Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), Thailand
TBRC: an online networking platform for biological collections in Thailand

11

14:25-14:50

Paul De Vos, University of Ghent, Belgium
Automated selection of reliable 16S rRNA gene sequence for phylogenetic tree construction

12

14:50-15:15

Di Liu, Institute of Microbiology, WFCC-MIRCEN World Data Center for Microorganisms(WDCM), China
DNA barcoding and the information system

13

15:15-15:40

Coffee break

Chaired by Juncai Ma

14

15:40-17:00

Round Table: Promotion of WDCM activities
Report by Linhuan Wu, Institute of Microbiology, WFCC-MIRCEN World Data Center for Microorganisms (WDCM),China
Global Catalogue of Microorganisms

Panel discussion:
Topics:

  1. Comments and suggestions to WDCM activities: what kind of services is expected to be provided by WDCM, database management system, software package, training course or others?
  2. What is a desirable information system for modern bio-resources center?
  3. How the emerging information technologies such as big data, cloud computing, semantic wed, could help in the utilization of microbial data?